Rising

Today's best preprints, by signal score.

all 92 method development 14 discovery 16 resource 3 biomedical 8

92 in the window; the type tabs sum to fewer — some papers are unclassified.

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RECON infers regions of interest from H&E images and reconstructs whole-slide molecular profiles at single-cell resolution

1d · Yang, X., Hao, N., Zhao, R., et al. · biorxiv

method development benchmarked top 2% open

Surfaced because: benchmarked against baselines.

Spatial Transcriptomics As Rasterized Image Tensors (STARIT) characterizes cell states with subcellular molecular heterogeneity

1d · Velazquez, D., Hallinan, C., An, R., et al. · biorxiv

method development top 10% novel

Surfaced because: matches the platform's topic region.

Data-driven spectroscopic dictionaries and detector-calibrated inference for photon-limited Raman hyperspectral imaging of living cells

1d · Yagi, S., Sagami, N., Eshima, I., et al. · biorxiv

method development top 1% novel

Surfaced because: matches the platform's topic region.

The first OpenBind release: An open experimental structure-affinity dataset and benchmark for structure-based AI

1d · Nelen, J., Khan, O., Adams, E., et al. · biorxiv

method development benchmarked top 2% open

Surfaced because: benchmarked against baselines.

GNMCADS: Sampling For Protein Conformation Diversity With Gaussian Network Model Guided Condition Annealed Diffusion Sampler

1d · Uzum, A. S., Haliloglu, T. · biorxiv

method development benchmarked top 2% open

Surfaced because: benchmarked against baselines.

TomatoPGFM: A graph-conditioned foundation model for tomato pangenomes

1d · Han, J., yushan, t., Wang, J., et al. · biorxiv

method development

Surfaced because: matches the platform's topic region.

Scaling recipes for single-cell RNA sequencing foundation models: when do scaling laws hold?

1d · Borra, F., Ciro', G., Castellini, A., et al. · biorxiv

method development

Surfaced because: matches the platform's topic region.

Calibration-free compression brings Evo 2 to its full million-token context on a single GPU

1d · Patsakis, M., Tzanakakis, A., Georgakopoulos-Soares, I. · biorxiv

method development

Surfaced because: matches the platform's topic region.

XpBrew and PanXpresso - automatic RNA-seq processing workflow and comprehensive collection of gene expression data

1d · Natarajan, S., Sterling, C., Choudhary, N., et al. · biorxiv

method development code top 2% open

Surfaced because: open code.

Using sequence-to-function models to interpret archaic hominin introgression

1d · Comerford, M., Alvim, I., Johanson, T. M., et al. · biorxiv

method development

Surfaced because: matches the platform's topic region.

dnoise: Fast Native Data Reduction for Bruker timsTOF

1d · Garrett, P. T., Diedrich, J. K., Yates, J. R. · biorxiv

method development benchmarked top 2% open

Surfaced because: benchmarked against baselines.

Rclade: automated taxonomic collapsing and geological-timescale annotation of time-calibrated phylogenetic trees in R

1d · Zeng, Z., Wang, Y. · biorxiv

method development benchmarked top 2% open

Surfaced because: benchmarked against baselines.

CyChat: a conversational Cytoscape app for no-code, reproducible network analysis

1d · Liebold, J., Stahl, M., Schulze, J.-O., et al. · biorxiv

method development

Surfaced because: matches the platform's topic region.

Automatic bioinformatic software named entity recognition from literature

1d · Xuan, H., Pasupuleti, R., Liu, B., et al. · biorxiv

method development benchmarked top 2% open

Surfaced because: benchmarked against baselines.