2078 in the window; the type tabs sum to fewer — some papers are unclassified.
Localized Chromatin Rewiring Shapes Rhythmic Transcription within a Stable 3D Genome in Rice
today ·
zhang, y., Chen, G., Guo, L., et al.
· biorxiv
discovery
top 1% novel
Surfaced because: matches the platform's topic region.
SPARK: Bayesian structure learning of enhancer-based gene regulatory networks from single-cell multiomics data and prior knowledge
1d ·
Masaki, N., Acharya, S., Malysheva, V., et al.
· biorxiv
method development
benchmarked
top 9% noveltop 5% open
Surfaced because: benchmarked against baselines.
scTGCL: A Transformer-Based Graph Contrastive Learning Approach for Efficiently Clustering Single-Cell RNA-seq Data
1d ·
Khan, M. S. A., Kabir, M. H., Faisal, M. M.
· biorxiv
method development
code
benchmarked
top 1% open
Surfaced because: open code, benchmarked against baselines.
A family-aware All of Us benchmark for polygenic prediction and genomic machine learning
1d ·
Ren, G., Wu, K., Ren, C., et al.
· medrxiv
biomedical
benchmarked
top 5% open
Surfaced because: benchmarked against baselines.
A latent space thermodynamic model of cell differentiation
2d ·
Poursina, A., Hajhashemi, S., Saberi, A., et al.
· biorxiv
method development
benchmarked
top 5% open
Surfaced because: benchmarked against baselines.
Embryonic macrophages chronologically change their brain-entry routes and competence for neural progenitor-induced microglial differentiation
1d ·
Ono, M., Shimamura, T., Yin, Z., et al.
· biorxiv
top 4% novel
Surfaced because: matches the platform's topic region.
flodl-bio: First Rust data, transformers and model layer for entire deep learning on biological sequences
1d ·
Sablok, G., de Stefanis, F.
· biorxiv
method development
code
benchmarked
top 1% open
Surfaced because: open code, benchmarked against baselines.
Co-evolutionary dynamics of defense systems and anti-defense genes in chromosomes and mobile genetic elements of Enterobacteriaceae
today ·
Liu, Y., Ahator, S. D., Botelho, J., et al.
· biorxiv
Surfaced because: matches the platform's topic region.
Spatiotemporal proteomic profiling of genome editing-associated microenvironment
1d ·
Xi, S., Kong, L., Zhou, W., et al.
· biorxiv
top 1% novel
Surfaced because: matches the platform's topic region.
Decoding & manipulating human intercellular signaling via scalable cell-free protein synthesis
1d ·
Tzouanas, C. N., Shan, F., Guzman, M., et al.
· biorxiv
top 1% novel
Surfaced because: matches the platform's topic region.
Technology solutions for immune loci: integrated high-resolution KIR genotyping reveals allelic, structural, and KIR-HLA diversity across 24 human populations
today ·
Pyo, C.-W., Wang, R., Thomas, A., et al.
· biorxiv
Surfaced because: matches the platform's topic region.
Can Folding Models Tell Binders from Bluffers? Evidence from POISK: The Patent-Derived Antibody Dataset
1d ·
Tupikina, D., Roncoli, A., Bujotzek, A., et al.
· biorxiv
benchmarked
top 5% open
Surfaced because: benchmarked against baselines.
Mapping bioimage-analysis software adoption in microscopy
1d ·
Shakespeare, T., Saraiva, B. M., Cunha, I., et al.
· biorxiv
method development
top 3% novel
Surfaced because: matches the platform's topic region.
Transcriptome dissection of the Zeb2-associated network reveals a role for NRPS15 in zearalenone biosynthesis in Fusarium graminearum
1d ·
Lee, N., Han, J. W., Kim, J.-E., et al.
· biorxiv
top 3% novel
Surfaced because: matches the platform's topic region.
Design of full-length agonist and antagonist antibodies for hard targets
1d ·
Pythia Labs Team,, Aglietti, R. A., Ansari, R., et al.
· biorxiv
Surfaced because: matches the platform's topic region.
Cornealia: automated collective order analysis reveals density-dependent reorganization of donor corneal endothelium
1d ·
Rostami, M., Asim, S., Steele, M., et al.
· biorxiv
top 8% novel
Surfaced because: matches the platform's topic region.
Prioritising determinants of systemic inflammation across molecular, physiological and disease phenotypes.
1d ·
Shepherd, F., Slaney, C., Jones, H. J., et al.
· medrxiv
biomedical
Surfaced because: matches the platform's topic region.
Coarse-graining metabolic networks via feature learning reveals cross-species growth predictors
3d ·
Zhu, A., Ho, P.-Y.
· biorxiv
method development
Surfaced because: matches the platform's topic region.
A finished, telomere-to-telomere assembly for Botrytis cinerea strain B05.10
2d ·
van Kan, J. A. L., Zheng, D., Pieterse, F. P. J., et al.
· biorxiv
data
top 5% open
Surfaced because: data available.
Generative augmentation recovers prognostic disease signatures from underpowered transcriptomic datasets
1d ·
Sethi, T., Anand, A., Pratiti, M., et al.
· biorxiv
benchmarked
top 5% open
Surfaced because: benchmarked against baselines.
Paired activity learning supports systematic identification of mutant-selective EGFR inhibitors
1d ·
Zhu, J., Kong, W., Huang, L., et al.
· biorxiv
biomedical
top 10% novel
Surfaced because: matches the platform's topic region.
Affinity Maturation Enables Dual Targeting of Cancer-Associated MUC1-Tn/STn and Drives Potent Tumor Control
1d ·
YE, J., Zhu, X., Lu, H., et al.
· biorxiv
biomedical
Surfaced because: matches the platform's topic region.
A unique intestinal epithelial cell that expresses canonical lymphoid genes
1d ·
Bhattacharya, S., Badarinath, K., Tie, G., et al.
· biorxiv
top 8% novel
Surfaced because: matches the platform's topic region.
Genetic control and tissue specificity of transcriptomic rhythmicity
1d ·
Chauquet, S., Hivert, V., Weger, B., et al.
· biorxiv
Surfaced because: matches the platform's topic region.
Establishment of a cochlear lymphatic vascular network and immune surveillance system following cochlear implantation
1d ·
Rahman, M. T., Razu, I., Fatima, S. M., et al.
· biorxiv
resource
Surfaced because: matches the platform's topic region.
Using XCiMS to Quantify the Benefits of Ion Mobility Spectrometry for Untargeted Metabolomics
1d ·
Wang, L., Cho, K., Yang, J., et al.
· biorxiv
biomedical
Surfaced because: matches the platform's topic region.
Overcoming segmentation bottlenecks in brain tissue for spatial proteomic inference at population scale
3d ·
You, L., Durbin, J. L., Meng, G., et al.
· biorxiv
method development
benchmarked
top 5% open
Surfaced because: benchmarked against baselines.
A knowledge graph-guided framework for multitask single-cell analysis
3d ·
Mathew, B., Maity, A., Ganguly, R., et al.
· biorxiv
benchmarked
top 5% open
Surfaced because: benchmarked against baselines.
Genome-wide LD scores enable robust heritability and genetic correlation estimation from summary statistics across genetic ancestries
5d ·
Jeong, M., Liu, Z., Ni, J., et al.
· biorxiv
benchmarked
top 5% open
Surfaced because: benchmarked against baselines.
DiffDriver Detects Context-Associated Selection of Cancer Driver Genes
1d ·
Zhou, J., Zhang, Q., Song, L., et al.
· biorxiv
biomedical
Surfaced because: matches the platform's topic region.